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CN09_15045 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_15045" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_15045ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (388 aa)    
Predicted Functional Partners:
CN09_15050
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
   
  0.996
CN09_15040
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
  0.988
CN09_00095
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
   
  0.937
CN09_15035
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
 
     
0.933
CN09_00070
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
  0.877
CN09_00125
Glycine/betaine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (375 aa)
 
  0.825
CN09_00140
Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
  0.820
CN09_01100
Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
  0.818
CN09_13640
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
              0.558
CN09_13645
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
   
        0.509
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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