STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_15170Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (195 aa)    
Predicted Functional Partners:
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.954
CN09_04325
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.764
CN09_08420
Maltose acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.694
cpsB
mannose-1-phosphate guanyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family
  
  
 0.642
CN09_15175
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.524
CN09_23675
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.495
CN09_24525
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.495
CN09_01860
D-arabinose 5-phosphate; Belongs to the SIS family. GutQ/KpsF subfamily
  
  
 0.484
CN09_28780
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.480
CN09_15160
2-deoxycytidine 5-triphosphate deaminase; Catalyzes the deamination of dCTP to form dUTP; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.444
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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