STRINGSTRING
CN09_15180 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_15180" - Tellurite resistance protein TerB in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_15180Tellurite resistance protein TerB; Derived by automated computational analysis using gene prediction method- Protein Homology (137 aa)    
Predicted Functional Partners:
CN09_15185
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
          0.999
CN09_15190
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (221 aa)
              0.999
CN09_15270
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
              0.795
CN09_07385
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
              0.692
CN09_17885
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the HpcH/HpaI aldolase family (304 aa)
              0.652
CN09_15255
Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (836 aa)
              0.652
CN09_01725
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (366 aa)
              0.588
CN09_03385
Sterol desaturase; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
              0.531
CN09_15275
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (269 aa)
   
          0.489
CN09_15195
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
 
          0.469
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (15%) [HD]