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CN09_15225 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_15225" - Methyltransferase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_15225Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)    
Predicted Functional Partners:
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
              0.786
CN09_12290
Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)
              0.744
CN09_15220
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (88 aa)
 
          0.736
CN09_06305
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source (559 aa)
              0.734
CN09_15255
Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (836 aa)
              0.727
CN09_15260
Metallophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
              0.723
CN09_12285
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (545 aa)
              0.723
CN09_15210
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (449 aa)
              0.635
CN09_15215
Secretion protein; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
              0.588
CN09_15230
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
              0.584
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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