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CN09_15630 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_15630" - Lytic transglycosylase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_15630Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)    
Predicted Functional Partners:
CN09_15635
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
 
     
  0.996
motB
Flagellar motor protein MotB; With MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method- Protein Homology (452 aa)
 
     
  0.988
CN09_15620
A periplasmic protein that interacts with and stabilizes MotB; in Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation; Derived by automated computational analysis using gene prediction method- Protein Homology (433 aa)
 
          0.982
CN09_15610
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (210 aa)
 
          0.967
CN09_15625
Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (535 aa)
 
     
  0.961
flgB
With FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella; Derived by automated computational analysis using gene prediction method- Protein Homology (130 aa)
 
     
  0.930
CN09_15455
Flagellar M-ring protein; The M ring may be actively involved in energy transduction (559 aa)
 
     
  0.900
CN09_15650
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (345 aa)
 
     
  0.888
flgK
With FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; Derived by automated computational analysis using gene prediction method- Protein Homology (491 aa)
 
     
  0.871
CN09_15680
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis (250 aa)
 
     
  0.871
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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