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CN09_15755 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_15755" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_15755Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)    
Predicted Functional Partners:
CN09_15760
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
 
          0.707
CN09_14910
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
     
  0.649
CN09_02805
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (513 aa)
 
 
 
  0.453
CN09_29065
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
 
          0.449
CN09_28860
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (226 aa)
   
          0.402
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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