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CN09_15795 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_15795" - Ankyrin in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_15795Ankyrin; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)    
Predicted Functional Partners:
CN09_22065
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (160 aa)
   
          0.733
CN09_15790
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (394 aa)
              0.641
CN09_21975
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (736 aa)
 
 
  0.554
CN09_15785
Glutamine synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glutamine synthetase family (478 aa)
     
 
  0.552
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (369 aa)
   
 
  0.515
CN09_08270
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (572 aa)
     
 
  0.487
CN09_25460
GlcNAc transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (281 aa)
 
 
  0.478
CN09_15780
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (432 aa)
              0.451
CN09_16735
Acetoin utilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
 
 
 
  0.442
CN09_09885
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (583 aa)
 
 
  0.424
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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