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dppF protein (Agrobacterium rhizogenes) - STRING interaction network
"dppF" - Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppFPart of the ABC transporter complex DppABCDF involved in the transport of dipeptides; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)    
Predicted Functional Partners:
CN09_15920
Peptide transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
  0.996
CN09_15915
Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method- Protein Homology (334 aa)
 
  0.981
CN09_15910
Peptide ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method- Protein Homology (531 aa)
 
  0.938
CN09_15925
DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)
 
 
0.924
CN09_03865
Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
  0.677
CN09_15935
Gluconokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (175 aa)
              0.671
oppB
Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
 
  0.650
CN09_33460
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
 
  0.641
CN09_26415
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.629
CN09_33415
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
  0.584
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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