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CN09_16050 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16050" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16050Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)    
Predicted Functional Partners:
CN09_16055
Glutamate--cysteine ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (457 aa)
              0.753
CN09_16045
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (68 aa)
              0.750
CN09_15860
Phasin; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)
   
          0.735
CN09_15835
Cell envelope biogenesis protein AsmA; Derived by automated computational analysis using gene prediction method- Protein Homology (631 aa)
   
          0.722
CN09_27960
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
   
          0.720
CN09_05610
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
   
          0.712
CN09_10155
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (108 aa)
   
          0.688
CN09_28825
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (102 aa)
   
          0.667
CN09_09870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
   
          0.667
CN09_13700
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (104 aa)
   
          0.660
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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