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CN09_16160 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16160" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16160Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (110 aa)    
Predicted Functional Partners:
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
              0.999
CN09_16165
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
          0.728
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (954 aa)
              0.714
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (807 aa)
              0.701
CN09_20885
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (172 aa)
 
          0.659
CN09_25560
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
   
          0.608
CN09_22745
Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (613 aa)
 
          0.566
CN09_04545
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (481 aa)
   
          0.539
CN09_15625
Chemotaxis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (535 aa)
   
          0.501
CN09_34310
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (565 aa)
   
          0.499
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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