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CN09_16170 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16170" - Uncharacterized protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
Databases
Textmining
[Homology]
Score
CN09_16170Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)    
Predicted Functional Partners:
CN09_10470
Copper oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (463 aa)
         
  0.672
CN09_28900
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (128 aa)
 
          0.649
CN09_16175
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (126 aa)
              0.649
argS
Arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (586 aa)
              0.532
CN09_34345
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
              0.513
CN09_01960
Cu resistance protein; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)
              0.467
CN09_03235
Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (183 aa)
              0.455
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N’-(5’-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity; Belongs to the ATP phosphoribosyltransferase family. Short subfamily (237 aa)
              0.450
hisZ
ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine (372 aa)
              0.450
hisS
Histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (504 aa)
              0.444
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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