STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16230Chromate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (481 aa)    
Predicted Functional Partners:
CN09_24365
Chromate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.767
CN09_05285
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.744
CN09_11080
Arsenic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.675
CN09_16225
10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
       0.674
fbp
Fructose-1,6-bisphosphatase class 1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FBPase class 1 family
       0.652
CN09_11070
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.642
CN09_16235
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.641
CN09_16240
Riboflavin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family
       0.619
rlmJ
Ribosomal RNA large subunit methyltransferase J; Specifically methylates the adenine in position 2030 of 23S rRNA
       0.591
CN09_16220
60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
     
 0.556
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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