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CN09_16295 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16295" - Patatin in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16295Patatin; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)    
Predicted Functional Partners:
CN09_16290
DNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (188 aa)
              0.891
CN09_01770
Lysophospholipase; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
   
   
  0.847
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
 
     
  0.706
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (535 aa)
              0.705
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
   
        0.576
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (520 aa)
              0.569
CN09_07075
Patatin; Derived by automated computational analysis using gene prediction method- Protein Homology (321 aa)
   
     
0.529
CN09_06330
Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
         
  0.482
folE
GTP cyclohydrolase 1; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)
 
     
  0.426
CN09_06070
Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (73 aa)
 
          0.410
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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