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CN09_16335 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16335" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16335Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (76 aa)    
Predicted Functional Partners:
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (606 aa)
              0.930
purD
Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GARS family (423 aa)
              0.744
xseA
Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family (538 aa)
              0.744
CN09_02970
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
   
     
  0.733
CN09_02965
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)
   
     
  0.720
CN09_15130
GcrA cell cycle regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (178 aa)
 
     
  0.666
CN09_02995
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (91 aa)
   
          0.663
CN09_02155
Regulator of CtrA degradation; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)
   
          0.648
CN09_16315
Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (79 aa)
 
          0.612
CN09_27595
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)
 
          0.611
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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