STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16390IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (261 aa)    
Predicted Functional Partners:
CN09_16375
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.892
CN09_16380
2-dehydro-3-deoxygalactonokinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.892
CN09_16385
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.886
CN09_16370
Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology
      0.883
CN09_25985
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.652
CN09_23800
Beta-D-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family
     
 0.632
CN09_01240
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.620
CN09_10635
Galactose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.615
CN09_16105
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.609
CN09_13665
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.604
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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