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CN09_16415 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16415" - ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16415ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (392 aa)    
Predicted Functional Partners:
CN09_17085
Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family (888 aa)
              0.984
CN09_06460
Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives (287 aa)
 
          0.775
glyS
Glycine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (742 aa)
              0.744
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family (450 aa)
              0.743
glyQ
Glycine--tRNA ligase alpha subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
              0.709
CN09_05605
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (370 aa)
   
          0.611
CN09_17845
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Dps family (169 aa)
              0.596
CN09_06025
Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology (409 aa)
   
          0.553
CN09_16525
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (63 aa)
 
          0.532
CN09_16420
ATP synthase protein I; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex (114 aa)
              0.529
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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