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CN09_16460 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16460" - Glycosyl transferase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
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[Homology]
Score
CN09_16460Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (172 aa)    
Predicted Functional Partners:
CN09_16455
Radical SAM protein; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
              0.833
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
   
   
  0.786
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (218 aa)
              0.754
CN09_27440
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (67 aa)
   
          0.722
CN09_16775
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
   
          0.708
CN09_05270
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1234 aa)
 
          0.692
CN09_06795
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1139 aa)
 
          0.691
CN09_14760
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)
   
          0.689
CN09_12020
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
   
          0.673
CN09_15750
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (137 aa)
   
          0.672
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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