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CN09_16610 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16610" - Scaffolding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16610Scaffolding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (269 aa)    
Predicted Functional Partners:
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate (319 aa)
              0.662
CN09_03955
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)
 
          0.615
CN09_29510
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)
 
          0.573
CN09_16620
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (150 aa)
              0.542
CN09_16115
Lipid A oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
 
     
  0.535
CN09_16605
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (144 aa)
              0.456
CN09_17090
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (91 aa)
   
          0.438
CN09_12005
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
 
          0.431
CN09_04795
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
 
          0.422
CN09_27965
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
   
          0.420
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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