CN09_16630 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_16630

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (836 aa)

Predicted Functional Partners:

flbT

0.905

CN09_15655

0.902

CN09_15690

0.895

CN09_15495

0.893

flgB

0.885

CN09_15550

0.874

CN09_15500

0.869

fliE

0.867

CN09_15560

0.856

flgK

0.851

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_15495	CN09_15500	CN09_15495	CN09_15500	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_15495	CN09_15550	CN09_15495	CN09_15550	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.935
CN09_15495	CN09_15560	CN09_15495	CN09_15560	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	0.997
CN09_15495	CN09_15655	CN09_15495	CN09_15655	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar biosynthesis regulator FlhF; Derived by automated computational analysis using gene prediction method: Protein Homology	0.790
CN09_15495	CN09_15690	CN09_15495	CN09_15690	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	Rod-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.995
CN09_15495	CN09_16630	CN09_15495	CN09_16630	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.893
CN09_15495	flbT	CN09_15495	CN09_15660	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	Probable flagellum biosynthesis repressor protein FlbT; Has a post-transcriptional repressor function in flagellum biogenesis. Associates with the 5'-UTR of fljK mRNA and promotes its degradation	0.800
CN09_15495	flgB	CN09_15495	CN09_15520	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	With FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella; Derived by automated computational analysis using gene prediction method: Protein Homology	0.996
CN09_15495	flgK	CN09_15495	CN09_15645	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	With FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; Derived by automated computational analysis using gene prediction method: Protein Homology	0.980
CN09_15495	fliE	CN09_15495	CN09_15530	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar hook-basal body complex protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.988
CN09_15500	CN09_15495	CN09_15500	CN09_15495	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_15500	CN09_15550	CN09_15500	CN09_15550	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.906
CN09_15500	CN09_15560	CN09_15500	CN09_15560	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	0.919
CN09_15500	CN09_15655	CN09_15500	CN09_15655	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar biosynthesis regulator FlhF; Derived by automated computational analysis using gene prediction method: Protein Homology	0.772
CN09_15500	CN09_15690	CN09_15500	CN09_15690	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	Rod-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.872
CN09_15500	CN09_16630	CN09_15500	CN09_16630	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.869
CN09_15500	flbT	CN09_15500	CN09_15660	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	Probable flagellum biosynthesis repressor protein FlbT; Has a post-transcriptional repressor function in flagellum biogenesis. Associates with the 5'-UTR of fljK mRNA and promotes its degradation	0.761
CN09_15500	flgB	CN09_15500	CN09_15520	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	With FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella; Derived by automated computational analysis using gene prediction method: Protein Homology	0.971
CN09_15500	flgK	CN09_15500	CN09_15645	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	With FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; Derived by automated computational analysis using gene prediction method: Protein Homology	0.984
CN09_15500	fliE	CN09_15500	CN09_15530	Motility protein A; Derived by automated computational analysis using gene prediction method: Protein Homology	Flagellar hook-basal body complex protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.968

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About