STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16660Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology (414 aa)    
Predicted Functional Partners:
CN09_16665
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.992
CN09_26030
N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.884
CN09_01650
Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.854
CN09_01655
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family
 
   
 0.823
CN09_03015
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family
 
   
 0.795
CN09_01640
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.794
soxG
Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.792
CN09_00020
Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.789
CN09_33905
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family
 
   
 0.789
CN09_32255
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.785
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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