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CN09_16675 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16675" - Membrane protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16675Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (163 aa)    
Predicted Functional Partners:
CN09_16625
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (188 aa)
 
          0.714
CN09_16275
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (210 aa)
   
          0.700
CN09_28005
Outer membrane lipoprotein omp19; Derived by automated computational analysis using gene prediction method- Protein Homology (177 aa)
   
          0.697
CN09_02950
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)
   
          0.690
CN09_02215
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (91 aa)
   
          0.680
CN09_11895
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
   
          0.661
CN09_06265
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
 
          0.652
CN09_10405
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (145 aa)
   
          0.648
CN09_11920
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (280 aa)
   
          0.645
CN09_16525
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (63 aa)
   
          0.639
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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