STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16825Invasion protein B; Derived by automated computational analysis using gene prediction method: Protein Homology (203 aa)    
Predicted Functional Partners:
tldD
Protease TldD; Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.899
CN09_16990
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.832
CN09_16830
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B)
       0.809
CN09_02985
Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.770
CN09_07995
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.769
CN09_08630
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.768
CN09_15220
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.767
CN09_07045
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.762
CN09_14535
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.758
CN09_14700
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.757
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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