CN09_16860 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_16860

Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology (271 aa)

Predicted Functional Partners:

CN09_29295

0.733

gcvP

0.717

CN09_16870

0.530

CN09_16855

0.511

CN09_16865

0.495

ispDF

0.492

CN09_08255

0.473

CN09_15390

0.473

CN09_05310

0.435

CN09_01935

0.413

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01935	CN09_16860	CN09_01935	CN09_16860	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.413
CN09_05310	CN09_16860	CN09_05310	CN09_16860	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.435
CN09_08255	CN09_15390	CN09_08255	CN09_15390	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.999
CN09_08255	CN09_16860	CN09_08255	CN09_16860	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.473
CN09_08255	ispDF	CN09_08255	CN09_07765	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.999
CN09_15390	CN09_08255	CN09_15390	CN09_08255	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.999
CN09_15390	CN09_16860	CN09_15390	CN09_16860	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.473
CN09_15390	ispDF	CN09_15390	CN09_07765	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.999
CN09_16855	CN09_16860	CN09_16855	CN09_16860	Cytochrome B562; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.511
CN09_16860	CN09_01935	CN09_16860	CN09_01935	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.413
CN09_16860	CN09_05310	CN09_16860	CN09_05310	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.435
CN09_16860	CN09_08255	CN09_16860	CN09_08255	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.473
CN09_16860	CN09_15390	CN09_16860	CN09_15390	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.473
CN09_16860	CN09_16855	CN09_16860	CN09_16855	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome B562; Derived by automated computational analysis using gene prediction method: Protein Homology	0.511
CN09_16860	CN09_16865	CN09_16860	CN09_16865	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.495
CN09_16860	CN09_16870	CN09_16860	CN09_16870	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.530
CN09_16860	CN09_29295	CN09_16860	CN09_29295	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology	0.733
CN09_16860	gcvP	CN09_16860	CN09_06885	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family	0.717
CN09_16860	ispDF	CN09_16860	CN09_07765	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.492
CN09_16865	CN09_16860	CN09_16865	CN09_16860	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.495

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About