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CN09_16870 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16870" - ATPase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16870ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (154 aa)    
Predicted Functional Partners:
CN09_16865
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (109 aa)
 
     
  0.987
CN09_16875
Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method- Protein Homology (138 aa)
 
          0.946
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (367 aa)
              0.712
CN09_29505
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (104 aa)
 
     
  0.530
CN09_16860
Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology (271 aa)
 
          0.530
CN09_12225
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
 
          0.529
CN09_32700
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
 
     
  0.493
CN09_02080
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
 
     
  0.431
CN09_06140
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (114 aa)
 
     
  0.420
CN09_02255
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (107 aa)
 
     
  0.410
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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