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CN09_16885 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16885" - Membrane protein in Agrobacterium rhizogenes
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
CN09_16885Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (121 aa)    
Predicted Functional Partners:
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis; Belongs to the IspH family (335 aa)
              0.995
CN09_16890
SURF1-like protein; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)
 
          0.918
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (888 aa)
              0.898
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids; Belongs to the RNase H family (146 aa)
              0.843
thrB
Homoserine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the pseudomonas-type ThrB family (321 aa)
              0.834
CN09_16855
Cytochrome B562; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
 
          0.824
CN09_20025
UPF0262 protein CN09_20025; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0262 family (157 aa)
 
     
  0.812
ctaG
Cytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I (204 aa)
 
          0.798
CN09_16830
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) (296 aa)
 
          0.796
CN09_16980
Threonine synthase; Catalyzes the formation of L-threonine from O-phospho-L-homoserine; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
              0.744
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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