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CN09_16945 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16945" - Cytochrome C biogenesis protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_16945Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)    
Predicted Functional Partners:
CN09_16940
Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (161 aa)
            0.893
CN09_16950
UPF0301 protein CN09_16950; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0301 (AlgH) family (201 aa)
              0.879
CN09_06790
Bacterioferritin; Derived by automated computational analysis using gene prediction method- Protein Homology (160 aa)
         
  0.672
CN09_16705
Hemolysin; Derived by automated computational analysis using gene prediction method- Protein Homology (246 aa)
              0.652
CN09_07325
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (260 aa)
              0.652
CN09_10150
CoA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
              0.645
CN09_17415
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (822 aa)
              0.622
CN09_09665
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
 
   
  0.573
CN09_27500
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
   
          0.498
CN09_06920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
   
          0.468
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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