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CN09_16955 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16955" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
CN09_16955Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0337 (CsbD) family (63 aa)    
Predicted Functional Partners:
CN09_31595
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (500 aa)
 
          0.684
CN09_16950
UPF0301 protein CN09_16950; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0301 (AlgH) family (201 aa)
              0.613
CN09_16960
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (351 aa)
              0.559
CN09_27430
Ribonuclease BN; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
 
          0.477
CN09_01305
UPF0391 membrane protein CN09_01305; Derived by automated computational analysis using gene prediction method- Protein Homology (57 aa)
 
        0.449
CN09_34275
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (240 aa)
 
          0.448
CN09_16945
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
              0.438
CN09_17845
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Dps family (169 aa)
 
        0.437
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S (257 aa)
              0.418
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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