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CN09_16960 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16960" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16960Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (351 aa)    
Predicted Functional Partners:
CN09_01715
IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
 
          0.999
CN09_01710
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (805 aa)
 
        0.989
CN09_01705
Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
          0.793
CN09_03620
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (469 aa)
 
        0.751
CN09_03615
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
 
        0.724
CN09_03610
Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
          0.689
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (717 aa)
              0.652
CN09_04350
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (212 aa)
              0.652
CN09_06505
Flagellar biosynthesis protein FliO; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
              0.612
CN09_16950
UPF0301 protein CN09_16950; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0301 (AlgH) family (201 aa)
              0.575
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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