CN09_16960 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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protein homology

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[Homology]

Score

CN09_16960

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (351 aa)

Predicted Functional Partners:

CN09_01715

0.999

CN09_01710

0.989

CN09_01705

0.793

CN09_03620

0.751

CN09_03615

0.724

CN09_03610

0.689

ligA

0.652

CN09_04350

0.652

CN09_06505

0.612

CN09_16950

0.575

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01705	CN09_01710	CN09_01705	CN09_01710	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.991
CN09_01705	CN09_01715	CN09_01705	CN09_01715	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_01705	CN09_03615	CN09_01705	CN09_03615	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.909
CN09_01705	CN09_03620	CN09_01705	CN09_03620	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.915
CN09_01705	CN09_16960	CN09_01705	CN09_16960	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.793
CN09_01710	CN09_01705	CN09_01710	CN09_01705	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.991
CN09_01710	CN09_01715	CN09_01710	CN09_01715	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01710	CN09_03610	CN09_01710	CN09_03610	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.947
CN09_01710	CN09_03615	CN09_01710	CN09_03615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.931
CN09_01710	CN09_03620	CN09_01710	CN09_03620	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.741
CN09_01710	CN09_16960	CN09_01710	CN09_16960	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.989
CN09_01715	CN09_01705	CN09_01715	CN09_01705	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.964
CN09_01715	CN09_01710	CN09_01715	CN09_01710	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01715	CN09_03610	CN09_01715	CN09_03610	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.625
CN09_01715	CN09_03615	CN09_01715	CN09_03615	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.981
CN09_01715	CN09_03620	CN09_01715	CN09_03620	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.971
CN09_01715	CN09_16960	CN09_01715	CN09_16960	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_03610	CN09_01710	CN09_03610	CN09_01710	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.947
CN09_03610	CN09_01715	CN09_03610	CN09_01715	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.625
CN09_03610	CN09_03615	CN09_03610	CN09_03615	Transglutaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.993

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