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CN09_16990 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_16990" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_16990Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (954 aa)
              0.841
CN09_16825
Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology (203 aa)
 
          0.832
CN09_02935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (766 aa)
   
          0.771
CN09_04280
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
   
          0.756
CN09_27580
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
   
          0.754
CN09_02960
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (388 aa)
   
          0.751
CN09_02445
Heat resistant agglutinin 1 protein; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
   
          0.739
CN09_10545
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (210 aa)
   
          0.737
CN09_07045
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)
   
          0.728
CN09_06795
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1139 aa)
   
          0.728
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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