STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_170102Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology (142 aa)    
Predicted Functional Partners:
CN09_17005
Biotin biosynthesis protein BioY; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.974
CN09_17000
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.869
CN09_09945
Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.652
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11
       0.607
CN09_02350
Na+/H+ antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.489
CN09_06470
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.476
CN09_08100
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.460
CN09_16065
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
       0.453
CN09_05550
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.434
CN09_03320
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.432
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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