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CN09_17045 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_17045" - 2-haloalkanoic acid dehalogenase in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_170452-haloalkanoic acid dehalogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)    
Predicted Functional Partners:
CN09_17050
Adenine glycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology (362 aa)
         
  0.945
CN09_17040
Caspase-1, p20-OmpA/MotB; Derived by automated computational analysis using gene prediction method- Protein Homology (121 aa)
              0.853
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (369 aa)
   
   
  0.772
CN09_06940
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde (277 aa)
     
      0.765
CN09_17410
Ornithine cyclodeaminase; Catalyzes the formation of L-proline from L-ornithine; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
              0.744
CN09_07640
Malonate transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (320 aa)
              0.744
CN09_06945
UPF0178 protein CN09_06945; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0178 family (154 aa)
              0.744
rpmJ
50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bL36 family (41 aa)
              0.744
CN09_02050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (209 aa)
              0.744
CN09_01990
UPF0335 protein CN09_01990; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0335 family (84 aa)
              0.744
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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