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CN09_17055 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_17055" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17055Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (165 aa)    
Predicted Functional Partners:
CN09_17060
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (245 aa)
 
          0.929
CN09_17050
Adenine glycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology (362 aa)
 
          0.861
CN09_17570
Recombinase RecB; Derived by automated computational analysis using gene prediction method- Protein Homology (1063 aa)
   
          0.775
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (375 aa)
 
          0.773
CN09_10325
Metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (185 aa)
   
          0.761
CN09_17575
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the helicase family. UvrD subfamily (1187 aa)
   
          0.722
CN09_05285
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
 
          0.696
atpE
ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (75 aa)
 
          0.694
CN09_06440
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (2225 aa)
 
          0.677
CN09_17755
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology (345 aa)
 
          0.671
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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