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CN09_17105 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_17105" - Beta-lactamase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17105Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)    
Predicted Functional Partners:
CN09_17110
Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (100 aa)
              0.867
nadA
Quinolinate synthase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate (323 aa)
              0.744
CN09_26325
Nicotinate-nucleotide pyrophosphorylase; Catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the NadC/ModD family (285 aa)
         
  0.722
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (954 aa)
              0.717
CN09_02350
Na+/H+ antiporter; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
              0.713
CN09_31335
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (498 aa)
         
  0.655
CN09_14140
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
     
  0.606
CN09_04875
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (112 aa)
              0.583
CN09_17430
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
 
          0.582
CN09_01935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (646 aa)
 
        0.519
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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