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CN09_17110 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_17110" - Cupin in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17110Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (100 aa)    
Predicted Functional Partners:
CN09_17105
Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
              0.867
CN09_11880
UPF0260 protein CN09_11880; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0260 family (161 aa)
              0.730
CN09_26875
Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DapA family (301 aa)
 
          0.508
CN09_17580
Thioredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the thioredoxin family (108 aa)
         
  0.491
CN09_17610
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)
              0.478
CN09_16670
Lysozyme; Derived by automated computational analysis using gene prediction method- Protein Homology (334 aa)
 
          0.454
CN09_17120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (89 aa)
              0.451
CN09_14480
Aldehyde-activating protein; Derived by automated computational analysis using gene prediction method- Protein Homology (144 aa)
 
          0.428
CN09_24710
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
          0.415
CN09_05135
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (382 aa)
 
     
  0.401
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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