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CN09_17150 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_17150" - Short-chain dehydrogenase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17150Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (275 aa)    
Predicted Functional Partners:
CN09_17155
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)
         
  0.656
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
         
  0.626
CN09_17145
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
              0.608
CN09_17160
Beta-glucosidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 3 family (819 aa)
              0.525
CN09_19740
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)
 
     
  0.506
CN09_30360
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
     
  0.504
CN09_14910
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
     
  0.502
CN09_28755
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
 
     
  0.474
CN09_18535
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
 
     
  0.468
CN09_02095
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
          0.437
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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