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CN09_17200 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_17200" - Invasion protein B in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17200Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology (225 aa)    
Predicted Functional Partners:
CN09_17195
Hemin transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (576 aa)
 
          0.944
CN09_29690
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (247 aa)
 
          0.830
CN09_34565
Hemin transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (568 aa)
 
          0.744
CN09_04630
Repressor; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
   
          0.743
CN09_05180
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
   
          0.729
CN09_08645
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (339 aa)
 
          0.727
CN09_04435
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
   
          0.720
CN09_08655
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
   
          0.719
CN09_29685
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (888 aa)
 
          0.715
CN09_08650
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
   
          0.710
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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