STRINGSTRING
CN09_17230 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_17230" - Arylsulfatase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17230Arylsulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology (548 aa)    
Predicted Functional Partners:
CN09_17255
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (517 aa)
 
     
  0.951
CN09_17240
MoxR protein; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
 
          0.951
CN09_17250
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
     
  0.950
CN09_17245
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (174 aa)
 
     
  0.946
CN09_17270
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)
 
     
  0.942
CN09_17215
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (487 aa)
 
          0.908
CN09_17280
Phenol degradation protein meta; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)
 
          0.856
CN09_17235
ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
 
          0.792
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
              0.766
CN09_17295
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)
 
     
  0.738
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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