CN09_17320 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_17320

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family (193 aa)

Predicted Functional Partners:

CN09_17315

0.975

nuoI

0.973

CN09_15290

0.894

CN09_02500

0.857

CN09_08390

0.857

CN09_10295

0.857

CN09_11055

0.857

CN09_11060

0.857

CN09_12485

0.857

CN09_19095

0.857

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_02500	CN09_17320	CN09_02500	CN09_17320	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.857
CN09_08390	CN09_17320	CN09_08390	CN09_17320	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.857
CN09_10295	CN09_17320	CN09_10295	CN09_17320	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.857
CN09_11055	CN09_17320	CN09_11055	CN09_17320	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.857
CN09_11060	CN09_17320	CN09_11060	CN09_17320	annotation not available	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.857
CN09_12485	CN09_17320	CN09_12485	CN09_17320	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.857
CN09_15290	CN09_17320	CN09_15290	CN09_17320	Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.894
CN09_17315	CN09_17320	CN09_17315	CN09_17320	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.975
CN09_17320	CN09_02500	CN09_17320	CN09_02500	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.857
CN09_17320	CN09_08390	CN09_17320	CN09_08390	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.857
CN09_17320	CN09_10295	CN09_17320	CN09_10295	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.857
CN09_17320	CN09_11055	CN09_17320	CN09_11055	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.857
CN09_17320	CN09_11060	CN09_17320	CN09_11060	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	annotation not available	0.857
CN09_17320	CN09_12485	CN09_17320	CN09_12485	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.857
CN09_17320	CN09_15290	CN09_17320	CN09_15290	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.894
CN09_17320	CN09_17315	CN09_17320	CN09_17315	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.975
CN09_17320	CN09_19095	CN09_17320	CN09_19095	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	annotation not available	0.857
CN09_17320	nuoI	CN09_17320	CN09_09975	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	Nadh dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	0.973
CN09_19095	CN09_17320	CN09_19095	CN09_17320	annotation not available	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.857
nuoI	CN09_17320	CN09_09975	CN09_17320	Nadh dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ompA family	0.973

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About