STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17555Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology (862 aa)    
Predicted Functional Partners:
CN09_17570
Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.999
CN09_17575
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily
 
     0.999
CN09_17560
Chlorosome protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.974
CN09_17565
Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.938
CN09_17580
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family
   
 
 0.860
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
     
 0.851
CN09_09860
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.799
CN09_02970
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.743
CN09_17545
Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.733
CN09_02155
Regulator of CtrA degradation; Derived by automated computational analysis using gene prediction method: Protein Homology
  
   
 0.727
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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