STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17650XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (121 aa)    
Predicted Functional Partners:
CN09_17665
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.962
CN09_17655
DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.960
CN09_17660
Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.955
CN09_17670
Exclusion suppressor FxsA; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.867
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
       0.828
CN09_13545
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.719
CN09_16105
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.716
CN09_07705
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.702
CN09_03050
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.642
CN09_04915
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.590
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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