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CN09_17655 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_17655" - DNA mismatch repair protein MutS in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
CN09_17655DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)    
Predicted Functional Partners:
CN09_08270
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (572 aa)
              0.999
CN09_17660
Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology (372 aa)
 
          0.968
CN09_17650
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (121 aa)
              0.960
CN09_17665
Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
 
          0.960
CN09_17670
Exclusion suppressor FxsA; Derived by automated computational analysis using gene prediction method- Protein Homology (178 aa)
              0.867
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA (157 aa)
              0.828
CN09_16105
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (439 aa)
              0.744
CN09_28455
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (216 aa)
 
          0.706
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
   
        0.686
murJ
Probable lipid II flippase MurJ; Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane (533 aa)
              0.684
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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