STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_17870Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology (272 aa)    
Predicted Functional Partners:
CN09_05375
6-phosphogluconate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.594
CN09_06715
Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
       0.577
CN09_07395
Lactoylglutathione lyase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.553
CN09_01165
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.539
CN09_01425
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.531
CN09_26455
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.495
leuD
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate; Belongs to the LeuD family. LeuD type 1 subfamily
       0.494
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
  
    0.481
CN09_12920
Adenine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.449
CN09_08760
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.433
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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