CN09_17905 protein (Agrobacterium rhizogenes)

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[Homology]

Score

CN09_17905

DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology (475 aa)

Predicted Functional Partners:

CN09_17910

0.977

CN09_17900

0.936

polA

0.923

CN09_09895

0.873

CN09_18280

0.833

dnaE2

0.820

pheT

0.719

lexA

0.653

CN09_17895

0.636

recA

0.543

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_09895	CN09_17905	CN09_09895	CN09_17905	DNA-directed DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.873
CN09_09895	lexA	CN09_09895	CN09_07850	DNA-directed DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology	LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	0.861
CN09_09895	pheT	CN09_09895	CN09_13825	DNA-directed DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology	Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	0.567
CN09_09895	polA	CN09_09895	CN09_13050	DNA-directed DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	0.988
CN09_09895	recA	CN09_09895	CN09_06535	DNA-directed DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	0.892
CN09_17895	CN09_17900	CN09_17895	CN09_17900	Zn-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.611
CN09_17895	CN09_17905	CN09_17895	CN09_17905	Zn-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.636
CN09_17895	CN09_17910	CN09_17895	CN09_17910	Zn-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	0.534
CN09_17900	CN09_17895	CN09_17900	CN09_17895	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Zn-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.611
CN09_17900	CN09_17905	CN09_17900	CN09_17905	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.936
CN09_17900	CN09_17910	CN09_17900	CN09_17910	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	0.834
CN09_17900	lexA	CN09_17900	CN09_07850	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	0.446
CN09_17905	CN09_09895	CN09_17905	CN09_09895	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA-directed DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.873
CN09_17905	CN09_17895	CN09_17905	CN09_17895	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Zn-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.636
CN09_17905	CN09_17900	CN09_17905	CN09_17900	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.936
CN09_17905	CN09_17910	CN09_17905	CN09_17910	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	0.977
CN09_17905	CN09_18280	CN09_17905	CN09_18280	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA polymerase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.833
CN09_17905	dnaE2	CN09_17905	CN09_33490	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	0.820
CN09_17905	lexA	CN09_17905	CN09_07850	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	0.653
CN09_17905	pheT	CN09_17905	CN09_13825	DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	0.719

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