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CN09_17930 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_17930" - Polysaccharide deacetylase in Agrobacterium rhizogenes
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
CN09_17930Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)    
Predicted Functional Partners:
nudH
RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5’-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage (179 aa)
         
  0.945
CN09_17940
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (486 aa)
   
 
  0.888
CN09_03985
Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology (729 aa)
 
   
  0.856
CN09_17935
Peptidase S41; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S41A family (441 aa)
              0.855
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family (160 aa)
   
        0.816
rsfS
Ribosomal silencing factor RsfS; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation (148 aa)
   
        0.803
CN09_07130
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (384 aa)
 
          0.783
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.766
CN09_13470
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (192 aa)
   
          0.764
CN09_13475
Pilus assembly protein TadG; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
   
          0.756
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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