STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18010GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (211 aa)    
Predicted Functional Partners:
CN09_18005
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    
0.972
CN09_27285
NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
      0.691
CN09_12170
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.684
CN09_32615
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.659
rpmA
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL27 family
       0.605
obgE
GTPase Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family
       0.575
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20
       0.554
CN09_08990
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.537
CN09_10640
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.493
proB
Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
       0.488
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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