CN09_18115 protein (Agrobacterium rhizogenes)

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[Homology]

Score

CN09_18115

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology (91 aa)

Predicted Functional Partners:

CN09_18105

0.968

CN09_18100

0.931

CN09_18095

0.921

CN09_18125

0.836

CN09_18110

0.724

CN09_18120

0.722

CN09_02105

0.653

CN09_02100

0.620

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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node1	node2	node1 annotation	node2 annotation	score
CN09_02100	CN09_02105	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.965
CN09_02100	CN09_18095	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.736
CN09_02100	CN09_18100	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.604
CN09_02100	CN09_18105	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	UPF0276 protein CN09_18105; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0276 family	0.658
CN09_02100	CN09_18110	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.654
CN09_02100	CN09_18115	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.620
CN09_02100	CN09_18125	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.856
CN09_02105	CN09_02100	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.965
CN09_02105	CN09_18095	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.684
CN09_02105	CN09_18100	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.668
CN09_02105	CN09_18105	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	UPF0276 protein CN09_18105; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0276 family	0.623
CN09_02105	CN09_18110	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.629
CN09_02105	CN09_18115	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.653
CN09_02105	CN09_18120	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.727
CN09_18095	CN09_02100	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.736
CN09_18095	CN09_02105	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.684
CN09_18095	CN09_18100	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.988
CN09_18095	CN09_18105	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology	UPF0276 protein CN09_18105; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0276 family	0.987
CN09_18095	CN09_18110	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.975
CN09_18095	CN09_18115	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.921