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CN09_18140 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18140" - Transposase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18140Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)    
Predicted Functional Partners:
CN09_25200
Cobalt transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (194 aa)
              0.652
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family (167 aa)
              0.602
CN09_18745
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
     
  0.599
CN09_12885
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
          0.594
CN09_08610
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (140 aa)
              0.547
CN09_19315
Serine recombinase; Derived by automated computational analysis using gene prediction method- Protein Homology (689 aa)
 
          0.496
CN09_12805
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (66 aa)
 
     
  0.485
KEA05610.1
Derived by automated computational analysis using gene prediction method- GeneMarkS+ (66 aa)
 
     
  0.485
CN09_22415
Plasmid partitioning protein ParA; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
              0.480
CN09_22685
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (88 aa)
       
  0.402
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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