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CN09_18165 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18165" - Transport permease protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18165Transport permease protein; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)    
Predicted Functional Partners:
CN09_18170
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
 
 
  0.990
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (324 aa)
 
   
  0.963
CN09_18160
Epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)
 
   
  0.944
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
 
   
  0.937
CN09_18150
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method- Protein Homology (374 aa)
 
   
  0.903
CN09_25510
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
 
 
  0.892
CN09_01860
D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily (331 aa)
   
   
  0.871
CN09_10055
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (518 aa)
 
   
  0.794
CN09_17580
Thioredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the thioredoxin family (108 aa)
              0.744
CN09_24495
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (357 aa)
 
   
  0.736
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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