STRINGSTRING
CN09_18345 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18345" - Sugar ABC transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18345Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)    
Predicted Functional Partners:
CN09_18350
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)
 
  0.972
CN09_18355
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (381 aa)
 
 
  0.947
CN09_18340
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (423 aa)
 
 
  0.849
CN09_18365
Isochorismatase; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
              0.838
CN09_18360
Cysteine hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
              0.838
CN09_18370
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (610 aa)
              0.825
CN09_23455
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
 
  0.822
CN09_25075
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
  0.820
CN09_21445
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (284 aa)
 
  0.820
CN09_26140
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (281 aa)
 
  0.814
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (14%) [HD]