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CN09_18375 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18375" - SgcQ protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18375SgcQ protein; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)    
Predicted Functional Partners:
CN09_18380
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FGGY kinase family (499 aa)
 
          0.928
CN09_22790
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (256 aa)
 
          0.676
CN09_18340
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (423 aa)
 
          0.654
CN09_22785
Aryldialkylphosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)
 
          0.614
CN09_18345
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
          0.612
CN09_18350
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)
 
          0.611
CN09_18325
3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)
 
          0.591
CN09_18365
Isochorismatase; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
              0.588
CN09_18360
Cysteine hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
              0.588
CN09_18355
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (381 aa)
         
  0.554
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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